PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g09600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 214aa    MW: 22862.2 Da    PI: 7.0929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g09600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1988135556
             AP2   5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                     GVr+++ +g+W+AeIrdp     +  +r++lg+f+t+e Aa+a+++a+++++g+
  Vang02g09600.1  88 GVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRGN 135
                     9*****.**********7.....337*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.68385142IPR001471AP2/ERF domain
PRINTSPR003676.1E-98697IPR001471AP2/ERF domain
PfamPF008471.6E-1388134IPR001471AP2/ERF domain
CDDcd000183.16E-1988144No hitNo description
SuperFamilySSF541711.37E-2188144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-3188143IPR001471AP2/ERF domain
SMARTSM003802.5E-3388148IPR001471AP2/ERF domain
PRINTSPR003676.1E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSLLTVAYQR GSGEFIRFTA DDGGEGEHGY GHDGGSGGSA GFNFNQGMLQ QQGEVTMQGG  60
SLVSGYNRGD PELRQMVSAL THVVSSGGVR QRPWGKWAAE IRDPHKAARV WLGTFDTEEA  120
AARAYDEAAL RFRGNRAKLN FPENVRAVPP IQPFQPATRL TSTNELFPTT GKPPSSRQQA  180
GDAAVNMSPW FGSGDRAQTS TPPHDQVSQV GGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2188145866ATERF1
3gcc_A5e-2188145866ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-143AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151985.12e-35hypothetical protein PHAVU_004G092100g
TrEMBLA0A0L9VKU42e-36A0A0L9VKU4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TAF04e-36A0A0S3TAF0_PHAAN; Uncharacterized protein
STRINGGLYMA02G08835.11e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4072422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-26ethylene response factor 110